Matlab replace the nan with average of previous and next non-missing value Ask Question Asked 8 years, 4 months ago Modified 8 years, 4 months ago Viewed 1k times -2 all, I have a large dataset with a lot of continuous NAs, is there any fast way to replace the NAs with the average of previous and next non-missing value by column? What do you mean "by column"? the code also should be able to work with any kind of array given, not only the example given. How to replace NaN values by Zeroes in a column of a Pandas Dataframe? Ah, ok. If the first value is NaN, everything should be NaN untill a different value appears in the column. Luis give the exact answers I need, thanks so much. Also using arrayfun () makes your code more readable. My goal is to. How do you check that a number is NaN in JavaScript? Why do you need to set nan to 100000. Accelerating the pace of engineering and science. Choose a web site to get translated content where available and see local events and I want to replace with the next valid measurement instead of the previous Any good ideas? There is no NA in the first and last row and it is 2D array. Good question Timothy Jackson. Is Energy "equal" to the curvature of Space-Time? How can I use a VPN to access a Russian website that is banned in the EU? Just be aware, that if the first element in a row is. Why is the federal judiciary of the United States divided into circuits? Reload the page to see its updated state. sites are not optimized for visits from your location. I like to replace NaNs with the previous values. I do this all the time, my code uses for loops, but I dont see anything wrong with for loops. You can also select a web site from the following list: Select the China site (in Chinese or English) for best site performance. Site design / logo 2022 Stack Exchange Inc; user contributions licensed under CC BY-SA. What happens if you score more than 99 points in volleyball? @Jakob: Simply replace the loops, wuch that run the other way around: Yes, I thought about that. I hope someone can answer this Sign in to comment. Learn more about replace, table, value . Based on I solved it using the solution provided by Matt at Matlab Central and modified it for case of rows instead of columns: Thanks for contributing an answer to Stack Overflow! I search for an "elegant" solution. It was very helpful man. We do not currently allow content pasted from ChatGPT on Stack Overflow; read our policy here. And where NaN is at the bottom on the column, i need to copy the above value and replace it with 'NaN'. This is a great little script! Assuming NaNs are not in the first/last row in any column, here is how I would do it: (If there are multiple consecutive NaNs, it searches for previous ann next non-missing values and averages them). Accepted Answer. Find centralized, trusted content and collaborate around the technologies you use most. This seems to fail when there are consecutive. How to check if any value is NaN in a Pandas DataFrame, Replace nan values with data from previous months. Find centralized, trusted content and collaborate around the technologies you use most. rev2022.12.9.43105. Oh, I guess he means, if there are continuous NaNs then we have to search for previous or next non-missing value. Unable to complete the action because of changes made to the page. Unable to complete the action because of changes made to the page. You can also select a web site from the following list: Select the China site (in Chinese or English) for best site performance. MathWorks is the leading developer of mathematical computing software for engineers and scientists. I have the following issue and i've spent an entire working on it and i never was able to solve it. What if the NaN is first or last in the column? I have a large dataset with a lot of continuous NAs, is there any fast way to replace the NAs with the average of previous and next non-missing value by column? Johannes, notice that your solution will fail if the first value in a column is nan. Why does the distance from light to subject affect exposure (inverse square law) while from subject to lens does not? Part of me would actually like the whole process to fail so I can figure out why I passed a full column of nans in the first place - that would be symptomatic of a much bigger issue Anyways, thanks for taking the time to run and test the code. Would salt mines, lakes or flats be reasonably found in high, snowy elevations? Maybe it's this? For example, the following solution does not use the FIND function, and only uses simple loops and thus should be very fast: This is really nice, readable and makes sense. How to drop rows of Pandas DataFrame whose value in a certain column is NaN, Pandas Replace NaN with blank/empty string. How does the Chameleon's Arcane/Divine focus interact with magic item crafting? Is there a higher analog of "category with all same side inverses is a groupoid"? Tabularray table when is wraped by a tcolorbox spreads inside right margin overrides page borders. I have a matrix data, that I am saving into data_Buffer. Also using arrayfun () makes your code more readable. vector (ind) = arrayfun (@ (x) nanmean (vector (x-5:x-1)), ind); a vectorized code is usually faster and at worst equivalent to loops. To learn more, see our tips on writing great answers. Hello. with the next finite value, and the second call replaces the leftover. Effect of coal and natural gas burning on particulate matter pollution. Site design / logo 2022 Stack Exchange Inc; user contributions licensed under CC BY-SA. Appropriate translation of "puer territus pedes nudos aspicit"? MATLAB represents values that are not real or complex numbers with a special value called NaN , which stands for "Not a Number". And where NaN is at the bottom on the column, i need to copy the above value and replace it with 'NaN'. If you have a 2D array and want to work by columns, a for loop over columns is probably the best option. all, And where NaN is at the bottom on the column, i need to copy the above value and replace it with 'NaN'. Johannes, notice that your solution will fail if the first value in a column is nan. ! Skip to content. Thanks a lot Lou Not the answer you're looking for? "Assuming NaNs are not in the first/last row in any column, and two NaNs are not consecutive in any column". For instance changing. Why is this usage of "I've to work" so awkward? Counterexamples to differentiation under integral sign, revisited. sites are not optimized for visits from your location. Please read the first line. your location, we recommend that you select: . indexes = find (isnan (m)) if ~isempty (indexes) % Handle case where first index is nan - get rid of it. offers. Thanks a lot What is the difference between (NaN != NaN) and (NaN !== NaN)? Ah, good catch Matt, thanks for that. What does NaN in MATLAB mean? Now lets say suppose we have a array such as, ^The above is just an example, the data array which i got is large (118x17) to be precise and it has NaN's filled everywhere (like the example of 'A'), Okay so i basically want to copy the value below 'NaN' and replace that value for NaN. In short the end result should look like this. ^The above is just an example, the data array which i got is large (118x17) to be precise and it has NaN's filled everywhere (like the example of 'A') Okay so i basically want to copy the value below 'NaN' and replace that value for NaN. Set value for particular cell in pandas DataFrame using index, pandas GroupBy columns with NaN (missing) values, pandas DataFrame: replace nan values with average of columns, Pandas Replace NaN with blank/empty string. MathWorks is the leading developer of mathematical computing software for engineers and scientists. How to use fillmising within a group, like with splitapply ? ^The above is just an example, the data array which i got is large (118x17) to be precise and it has NaN's filled everywhere (like the example of 'A') Okay so i basically want to copy the value below 'NaN' and replace that value for NaN. Replace specific values in one column with value. I especially like the fact that you were able to implement it as an in-place function. A= NaN NaN 2 4 8 NaN NaN to A= 2 2 2 4 8 8 8 ? Column 1 containing categorical elements [A A B C Other C B Other] and Column 2 with string elements ["NaN" "" "" "NaN" "D" "NaN" "NaN" "E"]. ), I would simply write a good FOR loop function that can handle all cases. You can accept your own answer if you solved the problem by yourself. I have the following problem. How to replace NaNs by preceding or next values in pandas DataFrame? replace first (x number) non-nan values with nan, replace nans with the first following non nan value (column - wise). Im sure there are more elegent solutions but this does the trick for me and is more than fast enough: This seems to fail when a whole column of data is nan. And where NaN is at the bottom on the column, i need to copy the above value and replace it with 'NaN'. ^The above is just an example, the data array which i got is large (118x17) to be precise and it has NaN's filled everywhere (like the example of 'A') Okay so i basically want to copy the value below 'NaN' and replace that value for NaN. function A = fill_nans (A) % Replaces the nans in each column with % previous non-nan values. I'm sure there is a way avoiding the for and the while statement. MOSFET is getting very hot at high frequency PWM, 1980s short story - disease of self absorption. your location, we recommend that you select: . You can directly replace them as I showed in my answer. vector (ind) = arrayfun (@ (x) nanmean (vector (x-5:x-1)), ind); a vectorized code is usually faster and at worst equivalent to loops. It's not the most efficient, but for 118x17 it should be fine. How to replace NaN values by Zeroes in a column of a Pandas Dataframe? Is it a 2D array? CGAC2022 Day 10: Help Santa sort presents! Other MathWorks country Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide, Thanks for the comment, I just got the solution, I will also update a specific example. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. How to logically replace a NaN value with previous non-NaN value in Matlab? I want to be able to quit Finder but can't edit Finder's Info.plist after disabling SIP. Debian/Ubuntu - Is there a man page listing all the version codenames/numbers? 2) If there are several consecutive NaN values, they should be replaced by the previous non-NaN value in the row. offers. Other MathWorks country Interesting question if only you explained clearly what you want. I think it works too! https://www.mathworks.com/matlabcentral/answers/50298-replace-nans-with-previous-values, https://www.mathworks.com/matlabcentral/answers/50298-replace-nans-with-previous-values#comment_104042, https://www.mathworks.com/matlabcentral/answers/50298-replace-nans-with-previous-values#comment_104048, https://www.mathworks.com/matlabcentral/answers/50298-replace-nans-with-previous-values#answer_294400, https://www.mathworks.com/matlabcentral/answers/50298-replace-nans-with-previous-values#comment_1011661, https://www.mathworks.com/matlabcentral/answers/50298-replace-nans-with-previous-values#comment_1199600, https://www.mathworks.com/matlabcentral/answers/50298-replace-nans-with-previous-values#answer_61409, https://www.mathworks.com/matlabcentral/answers/50298-replace-nans-with-previous-values#comment_104077, https://www.mathworks.com/matlabcentral/answers/50298-replace-nans-with-previous-values#comment_189672, https://www.mathworks.com/matlabcentral/answers/50298-replace-nans-with-previous-values#comment_249886, https://www.mathworks.com/matlabcentral/answers/50298-replace-nans-with-previous-values#comment_249917, https://www.mathworks.com/matlabcentral/answers/50298-replace-nans-with-previous-values#comment_249939, https://www.mathworks.com/matlabcentral/answers/50298-replace-nans-with-previous-values#comment_354925, https://www.mathworks.com/matlabcentral/answers/50298-replace-nans-with-previous-values#comment_450353, https://www.mathworks.com/matlabcentral/answers/50298-replace-nans-with-previous-values#answer_61400, https://www.mathworks.com/matlabcentral/answers/50298-replace-nans-with-previous-values#comment_104047, https://www.mathworks.com/matlabcentral/answers/50298-replace-nans-with-previous-values#answer_61414, https://www.mathworks.com/matlabcentral/answers/50298-replace-nans-with-previous-values#comment_104053, https://www.mathworks.com/matlabcentral/answers/50298-replace-nans-with-previous-values#comment_104073, https://www.mathworks.com/matlabcentral/answers/50298-replace-nans-with-previous-values#answer_274585. Can you please tell me how can I correct it? The algorithm should start from the first column and move towards the last column (i.e., if there is a NaN in column 10, it should be replaced by the valid value from column 9). Ive been using this for almost 2 years multiple times a day and thats never come up - I guess I never have a full column of nans. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. In short the end result should look like this. Thanks for contributing an answer to Stack Overflow! offers. This is my code: 1) In data_Buffer, how can I see search for NaN values in a row and replace them with the previous non-NaN value? What if a whole column is nan? And of course, if there can be NaN's at the beginning or end of a column, the problem is undefined. To learn more, see our tips on writing great answers. And where NaN is at the bottom on the column, i need to copy the above value and replace it with 'NaN'. https://es.mathworks.com/matlabcentral/answers/168979-replace-nan-with-previous-values, https://es.mathworks.com/matlabcentral/answers/168979-replace-nan-with-previous-values#answer_164050, https://es.mathworks.com/matlabcentral/answers/168979-replace-nan-with-previous-values#comment_259087, https://es.mathworks.com/matlabcentral/answers/168979-replace-nan-with-previous-values#comment_259151. Making statements based on opinion; back them up with references or personal experience. sites are not optimized for visits from your location. https://www.mathworks.com/matlabcentral/answers/168979-replace-nan-with-previous-values, https://www.mathworks.com/matlabcentral/answers/168979-replace-nan-with-previous-values#answer_164050, https://www.mathworks.com/matlabcentral/answers/168979-replace-nan-with-previous-values#comment_259087, https://www.mathworks.com/matlabcentral/answers/168979-replace-nan-with-previous-values#comment_259151. Why do you need to set nan to 100000. if indexes (1) == 1 m = m (2:end); indexes = indexes (2:end) - 1 end % Take prior index if element is nan. Learn more about nan, mean, for loop, if statement Choose a web site to get translated content where available and see local events and Appropriate translation of "puer territus pedes nudos aspicit"? matlab nan Share Follow edited Feb 27, 2015 at 17:11 your location, we recommend that you select: . Asking for help, clarification, or responding to other answers. This worked for me partially, since I need to replace missing values withing group. But then the OP said "a large dataset with. I may use it for myself, thanks for sharing! In a couple quick tests, a "find" based solution doesnt seem to be any worse performance wise, but I still think I like this better because it is really clean. For that matter, any method will fail since the behavior is not defined by the OP. Python Pandas replace NaN in one column with value from corresponding row of second column. Thanks for feedback!! Matlab replace the nan with average of previous and next non-missing value. Reload the page to see its updated state. I hope someone can answer this, Not good, would need the following: 4 5 6 7 8 32 5 6 21 8 12 5 12 21 8 34 5 12 21 8. Did the apostolic or early church fathers acknowledge Papal infallibility? Find the treasures in MATLAB Central and discover how the community can help you! m (indexes) = m (indexes-1) end John on 5 Jul 2012 0 Link try the following: x = isnan (data); for i = length (data) if x (i) == 1 By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. You should edit the question to include a minimal example with expected output. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. You may receive emails, depending on your. Rather than looking for a vectorized solution that may end up being rather convoluted (and being. Expressions like 0/0 and inf/inf result in NaN , as do any arithmetic operations involving a NaN : x = 0/0 x = NaN. Based on Connect and share knowledge within a single location that is structured and easy to search. You may receive emails, depending on your. It can be fixed I guess by putting an: after the line that calculates "indxFirst". You can also select a web site from the following list: Select the China site (in Chinese or English) for best site performance. You may receive emails, depending on your. Find the treasures in MATLAB Central and . with the next finite value, and the second call replaces the leftover. Thanks! Ready to optimize your JavaScript with Rust? Ready to optimize your JavaScript with Rust? rev2022.12.9.43105. Which value will fill it? Does balls to the wall mean full speed ahead or full speed ahead and nosedive? ^The above is just an example, the data array which i got is large (118x17) to be precise and it has NaN's filled everywhere (like the example of 'A') Okay so i basically want to copy the value below 'NaN' and replace that value for NaN. Unable to complete the action because of changes made to the page. Is it correct to say "The glue on the back of the sticker is dying down so I can not stick the sticker to the wall"? Does a 120cc engine burn 120cc of fuel a minute? Toggle Main Navigation . How does the Chameleon's Arcane/Divine focus interact with magic item crafting? Making statements based on opinion; back them up with references or personal experience. Wayne King on 9 Oct 2012 0 the code also should be able to work with any kind of array given, not only the example given. 2) If there are several consecutive NaN values, they should be replaced by the previous non- NaN value in the row. Are there conservative socialists in the US? Other MathWorks country All values <=-999 in data are replaced by NaN and stored in data_Buffer. Why is this usage of "I've to work" so awkward? Allow non-GPL plugins in a GPL main program. Replace NaN with mean of previous values. When would I give a checkpoint to my D&D party that they can return to if they die? Asking for help, clarification, or responding to other answers. Please please suggest some code, im desperate here. We do not currently allow content pasted from ChatGPT on Stack Overflow; read our policy here. Reload the page to see its updated state. Hi I tried to apply your codes but it showed following error: Error using fill_nans (line 4) Not enough input arguments. Name of a play about the morality of prostitution (kind of). What happens if you score more than 99 points in volleyball? Now lets say suppose we have a array such as, ^The above is just an example, the data array which i got is large (118x17) to be precise and it has NaN's filled everywhere (like the example of 'A'), Okay so i basically want to copy the value below 'NaN' and replace that value for NaN. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. Not the answer you're looking for? I found your procedure much more elegant and efficient. Connect and share knowledge within a single location that is structured and easy to search. Why is Singapore considered to be a dictatorial regime and a multi-party democracy at the same time? for ii = 1:size (A,2) I = A (1,ii); for jj = 2:size (A,1) if isnan (A (jj,ii)) A (jj,ii) = I; else I = A (jj,ii); end end end Good question Timothy Jackson. Examples of frauds discovered because someone tried to mimic a random sequence. Is it correct to say "The glue on the back of the sticker is dying down so I can not stick the sticker to the wall"? You can directly replace them as I showed in my answer. Help us identify new roles for community members, Proposing a Community-Specific Closure Reason for non-English content. I have the following issue and i've spent an entire working on it and i never was able to solve it. central limit theorem replacing radical n with n. Are the S&P 500 and Dow Jones Industrial Average securities? Does integrating PDOS give total charge of a system? Does integrating PDOS give total charge of a system? Accelerating the pace of engineering and science, MathWorks es el lder en el desarrollo de software de clculo matemtico para ingenieros, Hello. Would salt mines, lakes or flats be reasonably found in high, snowy elevations? Accepted Answer. Better way to check if an element only exists in one array. How can I fix it? How to smoothen the round border of a created buffer to make it look more natural? Can a prospective pilot be negated their certification because of too big/small hands? Appealing a verdict due to the lawyers being incompetent and or failing to follow instructions? Is it possible to hide or delete the new Toolbar in 13.1? Based on Find the treasures in MATLAB Central and discover how the community can help you! Please please suggest some code, im desperate here. what if NaNs are consecutive in any column? Lou. Learn more about nan, matrix manipulation MATLAB Accelerating the pace of engineering and science. How to logically replace a NaN value with previous non-NaN value in Matlab? How to replace NaNs by preceding or next values in pandas DataFrame? Haha, that's not a concern. Replace NaNs with previous values. Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide. Find the treasures in MATLAB Central and discover how the community can help you! solution provided by Matt at Matlab Central. Rather than looking for a vectorized solution that may end up being rather convoluted (and being slower! Actually, I had asked the OP the same question about consecutive NaNs, but this problem was too interesting for me to wait :). Did neanderthals need vitamin C from the diet? The algorithm should start from the first column and move towards the last column (i.e., if there is a NaN in column 10, it should be replaced by the valid value from column 9). Help us identify new roles for community members, Proposing a Community-Specific Closure Reason for non-English content. ), I would simply write a good FOR loop function that can handle all cases.For example, the following solution does not use the FIND function, and only uses simple loops and thus should be very fast: By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. It's not the most efficient, but for 118x17 it should be fine. Choose a web site to get translated content where available and see local events and And where NaN is at the bottom on the column, i need to copy the above value and replace it with 'NaN'. But I tried to use flipud before the loop and then reverse the flip after the operation. Is there a way to do this both before and after values? 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